Loop J4_9NLE

3D structure

PDB id: 9NLE (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: UCUUGACAUCCACGGAAGUU*AAUGUGC*GAACCGUGAGACAG*CUUACGA
Length: 48 nucleotides
Bulged bases: 9NLE|1|R3|A|1000, 9NLE|1|R3|G|1003, 9NLE|1|R3|U|1007, 9NLE|1|R3|U|1212, 9NLE|1|R3|C|1214
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9NLE|1|R3|U|989
9NLE|1|R3|C|990
9NLE|1|R3|U|991
9NLE|1|R3|U|992
9NLE|1|R3|G|993
9NLE|1|R3|A|994
9NLE|1|R3|C|995
9NLE|1|R3|A|996
9NLE|1|R3|U|997
9NLE|1|R3|C|998
9NLE|1|R3|C|999
9NLE|1|R3|A|1000
9NLE|1|R3|C|1001
9NLE|1|R3|G|1002
9NLE|1|R3|G|1003
9NLE|1|R3|A|1004
9NLE|1|R3|A|1005
9NLE|1|R3|G|1006
9NLE|1|R3|U|1007
9NLE|1|R3|U|1008
*
9NLE|1|R3|A|1021
9NLE|1|R3|A|1022
9NLE|1|R3|U|1023
9NLE|1|R3|G|1024
9NLE|1|R3|U|1025
9NLE|1|R3|G|1026
9NLE|1|R3|C|1027
*
9NLE|1|R3|G|1034
9NLE|1|R3|A|1035
9NLE|1|R3|A|1036
9NLE|1|R3|C|1037
9NLE|1|R3|C|1038
9NLE|1|R3|G|1039
9NLE|1|R3|U|1040
9NLE|1|R3|G|1041
9NLE|1|R3|A|1042
9NLE|1|R3|G|1043
9NLE|1|R3|A|1044
9NLE|1|R3|C|1045
9NLE|1|R3|A|1046
9NLE|1|R3|G|1047
*
9NLE|1|R3|C|1210
9NLE|1|R3|U|1211
9NLE|1|R3|U|1212
9NLE|1|R3|A|1213
9NLE|1|R3|C|1214
9NLE|1|R3|G|1215
9NLE|1|R3|A|1216

Current chains

Chain R3: 16S ribosomal RNA

Nearby chains

Chain sn: Small ribosomal subunit protein uS14

J4_9NLE_015