J4_9NLF_002

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NLF|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLF_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1453

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLF|1|R1|C|601
9NLF|1|R1|A|602
9NLF|1|R1|A|603
9NLF|1|R1|G|604
*
9NLF|1|R1|C|624
9NLF|1|R1|G|625
9NLF|1|R1|A|626
9NLF|1|R1|A|627
9NLF|1|R1|G|628
*
9NLF|1|R1|C|635
9NLF|1|R1|G|636
9NLF|1|R1|A|637
9NLF|1|R1|G|638
*
9NLF|1|R1|C|650
9NLF|1|R1|G|651
9NLF|1|R1|U|652
9NLF|1|R1|U|653
9NLF|1|R1|A|654
9NLF|1|R1|A|655
9NLF|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4