J4_9NLF_008

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9NLF|1|R1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLF_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1166

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9NLF|1|R1|C|1833
9NLF|1|R1|U|1834
9NLF|1|R1|G|1835
*
9NLF|1|R1|C|1905
9NLF|1|R1|G|1906
*
9NLF|1|R1|C|1924
9NLF|1|R1|C|1925
9NLF|1|R1|U|1926
9NLF|1|R1|A|1927
9NLF|1|R1|A|1928
9NLF|1|R1|G|1929
9NLF|1|R1|G|1930
9NLF|1|R1|U|1931
9NLF|1|R1|A|1932
9NLF|1|R1|G|1933
*
9NLF|1|R1|C|1967
9NLF|1|R1|G|1968
9NLF|1|R1|A|1969
9NLF|1|R1|A|1970
9NLF|1|R1|U|1971
9NLF|1|R1|G|1972

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA

Chain T

Transfer RNA; tRNA