J4_9NLH_002

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NLH|1|R1|U|653, 9NLH|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLH_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1702

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLH|1|R1|C|601
9NLH|1|R1|A|602
9NLH|1|R1|A|603
9NLH|1|R1|G|604
*
9NLH|1|R1|C|624
9NLH|1|R1|G|625
9NLH|1|R1|A|626
9NLH|1|R1|A|627
9NLH|1|R1|G|628
*
9NLH|1|R1|C|635
9NLH|1|R1|G|636
9NLH|1|R1|A|637
9NLH|1|R1|G|638
*
9NLH|1|R1|C|650
9NLH|1|R1|G|651
9NLH|1|R1|U|652
9NLH|1|R1|U|653
9NLH|1|R1|A|654
9NLH|1|R1|A|655
9NLH|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4