J4_9NLJ_001

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAGUGUGUUUCGACACACUAUCAU*AAUGAGG

Length

45 nucleotides

Bulged bases

9NLJ|1|R1|U|50, 9NLJ|1|R1|U|137, 9NLJ|1|R1|U|138, 9NLJ|1|R1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|C|47
9NLJ|1|R1|G|48
9NLJ|1|R1|A|49
9NLJ|1|R1|U|50
9NLJ|1|R1|G|51
9NLJ|1|R1|A|52
9NLJ|1|R1|A|53
9NLJ|1|R1|G|54
*
9NLJ|1|R1|C|116
9NLJ|1|R1|G|117
9NLJ|1|R1|A|118
9NLJ|1|R1|A|119
9NLJ|1|R1|U|120
9NLJ|1|R1|G|121
*
9NLJ|1|R1|C|130
9NLJ|1|R1|A|131
9NLJ|1|R1|G|132
9NLJ|1|R1|U|133
9NLJ|1|R1|G|134
9NLJ|1|R1|U|135
9NLJ|1|R1|G|136
9NLJ|1|R1|U|137
9NLJ|1|R1|U|138
9NLJ|1|R1|U|139
9NLJ|1|R1|C|140
9NLJ|1|R1|G|141
9NLJ|1|R1|A|142
9NLJ|1|R1|C|143
9NLJ|1|R1|A|144
9NLJ|1|R1|C|145
9NLJ|1|R1|A|146
9NLJ|1|R1|C|147
9NLJ|1|R1|U|148
9NLJ|1|R1|A|149
9NLJ|1|R1|U|150
9NLJ|1|R1|C|151
9NLJ|1|R1|A|152
9NLJ|1|R1|U|153
*
9NLJ|1|R1|A|172
9NLJ|1|R1|A|173
9NLJ|1|R1|U|174
9NLJ|1|R1|G|175
9NLJ|1|R1|A|176
9NLJ|1|R1|G|177
9NLJ|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 28

50S ribosomal protein L28

Chain 34

50S ribosomal protein L34