J4_9NLJ_003

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NLJ|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLJ_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1436

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLJ|1|R1|C|601
9NLJ|1|R1|A|602
9NLJ|1|R1|A|603
9NLJ|1|R1|G|604
*
9NLJ|1|R1|C|624
9NLJ|1|R1|G|625
9NLJ|1|R1|A|626
9NLJ|1|R1|A|627
9NLJ|1|R1|G|628
*
9NLJ|1|R1|C|635
9NLJ|1|R1|G|636
9NLJ|1|R1|A|637
9NLJ|1|R1|G|638
*
9NLJ|1|R1|C|650
9NLJ|1|R1|G|651
9NLJ|1|R1|U|652
9NLJ|1|R1|U|653
9NLJ|1|R1|A|654
9NLJ|1|R1|A|655
9NLJ|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4