J4_9NLJ_012

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9NLJ|1|R3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|G|115
9NLJ|1|R3|A|116
9NLJ|1|R3|G|117
9NLJ|1|R3|U|118
9NLJ|1|R3|A|119
9NLJ|1|R3|A|120
9NLJ|1|R3|U|121
9NLJ|1|R3|G|122
*
9NLJ|1|R3|U|239
9NLJ|1|R3|G|240
*
9NLJ|1|R3|C|286
9NLJ|1|R3|U|287
9NLJ|1|R3|A|288
9NLJ|1|R3|G|289
*
9NLJ|1|R3|C|311
9NLJ|1|R3|C|312

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17