J4_9NLQ_002

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NLQ|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLQ_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1441

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLQ|1|R1|C|601
9NLQ|1|R1|A|602
9NLQ|1|R1|A|603
9NLQ|1|R1|G|604
*
9NLQ|1|R1|C|624
9NLQ|1|R1|G|625
9NLQ|1|R1|A|626
9NLQ|1|R1|A|627
9NLQ|1|R1|G|628
*
9NLQ|1|R1|C|635
9NLQ|1|R1|G|636
9NLQ|1|R1|A|637
9NLQ|1|R1|G|638
*
9NLQ|1|R1|C|650
9NLQ|1|R1|G|651
9NLQ|1|R1|U|652
9NLQ|1|R1|U|653
9NLQ|1|R1|A|654
9NLQ|1|R1|A|655
9NLQ|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4