J4_9NLQ_013

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9NLQ|1|R3|C|576, 9NLQ|1|R3|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLQ_013 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.086

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R3|G|575
9NLQ|1|R3|C|576
9NLQ|1|R3|G|577
*
9NLQ|1|R3|C|764
9NLQ|1|R3|G|765
9NLQ|1|R3|A|766
9NLQ|1|R3|A|767
9NLQ|1|R3|A|768
9NLQ|1|R3|G|769
*
9NLQ|1|R3|C|810
9NLQ|1|R3|C|811
9NLQ|1|R3|G|812
9NLQ|1|R3|U|813
9NLQ|1|R3|A|814
9NLQ|1|R3|A|815
9NLQ|1|R3|A|816
9NLQ|1|R3|C|817
9NLQ|1|R3|G|818
9NLQ|1|R3|A|819
9NLQ|1|R3|U|820
9NLQ|1|R3|G|821
*
9NLQ|1|R3|C|879
9NLQ|1|R3|C|880

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sh

30S ribosomal protein S8

Chain sk

Small ribosomal subunit protein uS11

Chain sl

Small ribosomal subunit protein uS12

Chain so

Small ribosomal subunit protein uS15

Chain sq

Small ribosomal subunit protein uS17

Chain su

Small ribosomal subunit protein bS21