J4_9NLS_002

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NLS|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLS_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1219

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLS|1|R1|C|601
9NLS|1|R1|A|602
9NLS|1|R1|A|603
9NLS|1|R1|G|604
*
9NLS|1|R1|C|624
9NLS|1|R1|G|625
9NLS|1|R1|A|626
9NLS|1|R1|A|627
9NLS|1|R1|G|628
*
9NLS|1|R1|C|635
9NLS|1|R1|G|636
9NLS|1|R1|A|637
9NLS|1|R1|G|638
*
9NLS|1|R1|C|650
9NLS|1|R1|G|651
9NLS|1|R1|U|652
9NLS|1|R1|U|653
9NLS|1|R1|A|654
9NLS|1|R1|A|655
9NLS|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4