J4_9NLS_008
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9NLS|1|R1|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NLS_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1217
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NLS|1|R1|C|1833
9NLS|1|R1|U|1834
9NLS|1|R1|G|1835
*
9NLS|1|R1|C|1905
9NLS|1|R1|G|1906
*
9NLS|1|R1|C|1924
9NLS|1|R1|C|1925
9NLS|1|R1|U|1926
9NLS|1|R1|A|1927
9NLS|1|R1|A|1928
9NLS|1|R1|G|1929
9NLS|1|R1|G|1930
9NLS|1|R1|U|1931
9NLS|1|R1|A|1932
9NLS|1|R1|G|1933
*
9NLS|1|R1|C|1967
9NLS|1|R1|G|1968
9NLS|1|R1|A|1969
9NLS|1|R1|A|1970
9NLS|1|R1|U|1971
9NLS|1|R1|G|1972
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L2
- Chain R3
- Small subunit ribosomal RNA; SSU rRNA
- Chain T
- Transfer RNA; tRNA
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: