J4_9O2Y_004

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

CGG*CCAGCG*UAGCCAGC*GG

Length

19 nucleotides

Bulged bases

9O2Y|1|Y|A|42|||A, 9O2Y|1|Y|C|45

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O2Y|1|Y|C|7
9O2Y|1|Y|G|10
9O2Y|1|Y|G|11
*
9O2Y|1|Y|C|24
9O2Y|1|Y|C|25
9O2Y|1|Y|A|25|||A
9O2Y|1|Y|G|26
9O2Y|1|Y|C|27
9O2Y|1|Y|G|28
*
9O2Y|1|Y|U|42
9O2Y|1|Y|A|42|||A
9O2Y|1|Y|G|43
9O2Y|1|Y|C|44
9O2Y|1|Y|C|45
9O2Y|1|Y|A|47
9O2Y|1|Y|G|48
9O2Y|1|Y|C|49
*
9O2Y|1|Y|G|65
9O2Y|1|Y|G|66

Current chains

Chain Y

A-site tRNAPyl

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA