J4_9O3I_019

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

9O3I|1|2A|G|1271, 9O3I|1|2A|A|1272, 9O3I|1|2A|U|1273, 9O3I|1|2A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3I|1|2A|C|1270
9O3I|1|2A|G|1271
9O3I|1|2A|A|1272
9O3I|1|2A|U|1273
9O3I|1|2A|A|1274
9O3I|1|2A|A|1275
9O3I|1|2A|A|1276
*
9O3I|1|2A|U|1294
9O3I|1|2A|C|1295
*
9O3I|1|2A|G|1645
9O3I|1|2A|C|1646
9O3I|1|2A|G|1647
9O3I|1|2A|C|1648
*
9O3I|1|2A|G|2009
9O3I|1|2A|G|2010

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2R

50S ribosomal protein L17

Chain 2W

50S ribosomal protein L22