J4_9O3I_023

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3I|1|2A|G|1772
9O3I|1|2A|A|1773
9O3I|1|2A|C|1774
9O3I|1|2A|U|1775
9O3I|1|2A|G|1776
*
9O3I|1|2A|C|1788
9O3I|1|2A|A|1789
9O3I|1|2A|C|1790
9O3I|1|2A|A|1791
9O3I|1|2A|G|1792
*
9O3I|1|2A|C|1827
9O3I|1|2A|G|1828
9O3I|1|2A|A|1829
9O3I|1|2A|C|1830
*
9O3I|1|2A|G|1975
9O3I|1|2A|U|1976
9O3I|1|2A|A|1977
9O3I|1|2A|A|1978
9O3I|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA