J4_9O3I_029

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9O3I|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3I|1|2a|G|575
9O3I|1|2a|G|576
9O3I|1|2a|G|577
*
9O3I|1|2a|C|764
9O3I|1|2a|G|765
9O3I|1|2a|A|766
9O3I|1|2a|A|767
9O3I|1|2a|A|768
9O3I|1|2a|G|769
*
9O3I|1|2a|C|810
9O3I|1|2a|C|811
9O3I|1|2a|C|812
9O3I|1|2a|U|813
9O3I|1|2a|A|814
9O3I|1|2a|A|815
9O3I|1|2a|A|816
9O3I|1|2a|C|817
9O3I|1|2a|G|818
9O3I|1|2a|A|819
9O3I|1|2a|U|820
9O3I|1|2a|G|821
*
9O3I|1|2a|C|879
9O3I|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17