J4_9O3L_016

3D structure

PDB id

9O3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

9O3L|1|1y|4SU|8, 9O3L|1|1y|U|47, 9O3L|1|1y|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3L|1|1y|A|7
9O3L|1|1y|4SU|8
9O3L|1|1y|A|9
9O3L|1|1y|G|10
*
9O3L|1|1y|C|25
9O3L|1|1y|A|26
9O3L|1|1y|G|27
*
9O3L|1|1y|C|43
9O3L|1|1y|G|44
9O3L|1|1y|U|45
9O3L|1|1y|G7M|46
9O3L|1|1y|U|47
9O3L|1|1y|C|48
9O3L|1|1y|C|49
*
9O3L|1|1y|G|65
9O3L|1|1y|U|66

Current chains

Chain 1y

A-site and E-site Deacylated tRNAphe

Nearby chains

Chain 16

50S ribosomal protein L33

Chain 1g

30S ribosomal protein S7