J4_9O3W_001

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9O3W|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|C|111
9O3W|1|L5|C|112
*
9O3W|1|L5|G|278
9O3W|1|L5|A|279
9O3W|1|L5|G|280
9O3W|1|L5|U|281
9O3W|1|L5|C|282
9O3W|1|L5|G|283
*
9O3W|1|L5|C|304
9O3W|1|L5|A|305
9O3W|1|L5|A|306
9O3W|1|L5|A|307
9O3W|1|L5|G|308
9O3W|1|L5|C|309
9O3W|1|L5|G|310
*
9O3W|1|L5|U|327
9O3W|1|L5|A|328
9O3W|1|L5|A|329
9O3W|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain Lh

Large ribosomal subunit protein uL29

Chain Li

Large ribosomal subunit protein eL36