J4_9O3W_008

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9O3W|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|2618
9O3W|1|L5|G|2619
*
9O3W|1|L5|U|2637
9O3W|1|L5|G|2638
9O3W|1|L5|U|2639
9O3W|1|L5|G|2640
9O3W|1|L5|A|2641
9O3W|1|L5|A|2642
*
9O3W|1|L5|U|2692
9O3W|1|L5|G|2693
9O3W|1|L5|G|2694
9O3W|1|L5|A|2695
9O3W|1|L5|A|2696
9O3W|1|L5|A|2697
9O3W|1|L5|G|2698
*
9O3W|1|L5|U|2718
9O3W|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL22

Chain Lg

Large ribosomal subunit protein eL34

Chain Lk

Large ribosomal subunit protein eL38