J4_9O3W_009

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|3634
9O3W|1|L5|A|3635
9O3W|1|L5|C|3636
9O3W|1|L5|PSU|3637
9O3W|1|L5|G|3638
*
9O3W|1|L5|C|3650
9O3W|1|L5|A|3651
9O3W|1|L5|A|3652
9O3W|1|L5|A|3653
9O3W|1|L5|G|3654
*
9O3W|1|L5|U|3690
9O3W|1|L5|G|3691
9O3W|1|L5|A|3692
9O3W|1|L5|U|3693
9O3W|1|L5|U|3694
*
9O3W|1|L5|A|3821
9O3W|1|L5|U|3822
9O3W|1|L5|G|3823
9O3W|1|L5|A|3824
9O3W|1|L5|A2M|3825
9O3W|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

Small ribosomal subunit protein eS32

Chain Lp

Large ribosomal subunit protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA