J4_9O3W_014

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUG(2MG)*UUC*GCGGCC*GU

Length

15 nucleotides

Bulged bases

9O3W|1|Pt|C|47

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9O3W|1|Pt|G|7
9O3W|1|Pt|U|8
9O3W|1|Pt|G|9
9O3W|1|Pt|2MG|10
*
9O3W|1|Pt|U|25
9O3W|1|Pt|U|26
9O3W|1|Pt|C|27
*
9O3W|1|Pt|G|43
9O3W|1|Pt|C|44
9O3W|1|Pt|G|45
9O3W|1|Pt|G|46
9O3W|1|Pt|C|47
9O3W|1|Pt|C|48
*
9O3W|1|Pt|G|64
9O3W|1|Pt|U|65

Current chains

Chain Pt

P-site glutamyl-tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large ribosomal subunit protein uL16

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SS

Small ribosomal subunit protein uS13

Chain SZ

Small ribosomal subunit protein eS25