J4_9OWK_001

3D structure

PDB id

9OWK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 10 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GC*GG*CG*CC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9OWK_001 not in the Motif Atlas

Homologous match to J4_1NBS_002

Geometric discrepancy: 0.3327

The information below is about J4_1NBS_002

Detailed Annotation

RNase P junction

Broad Annotation

No text annotation

Motif group

J4_86610.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9OWK|1|A|G|91
9OWK|1|A|C|92
*
9OWK|1|A|G|113
9OWK|1|A|G|114
*
9OWK|1|A|C|138
9OWK|1|A|G|139
*
9OWK|1|A|C|244
9OWK|1|A|C|245

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA