J4_9OWM_002

3D structure

PDB id

9OWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUAG*CAC*GGGGUCG*UC

Length

16 nucleotides

Bulged bases

9OWM|1|C|U|8, 9OWM|1|C|U|46, 9OWM|1|C|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9OWM_002 not in the Motif Atlas

Homologous match to J4_1QU2_001

Geometric discrepancy: 0.2697

The information below is about J4_1QU2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9OWM|1|C|G|7
9OWM|1|C|U|8
9OWM|1|C|A|9
9OWM|1|C|G|10
*
9OWM|1|C|C|24
9OWM|1|C|A|25
9OWM|1|C|C|26
*
9OWM|1|C|G|42
9OWM|1|C|G|43
9OWM|1|C|G|44
9OWM|1|C|G|45
9OWM|1|C|U|46
9OWM|1|C|C|47
9OWM|1|C|G|48
*
9OWM|1|C|U|64
9OWM|1|C|C|65

Current chains

Chain C

mature tRNA (75-MER)

Nearby chains

Chain A

Ribonuclease P class B; RNase P class B