J4_9OWO_002

3D structure

PDB id

9OWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (sub-conformation 1 of tRNA anticodon arm tilted)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUAG*CACC*GGGGGUCG*UC

Length

18 nucleotides

Bulged bases

9OWO|1|C|U|8, 9OWO|1|C|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9OWO_002 not in the Motif Atlas

Homologous match to J4_5WWT_001

Geometric discrepancy: 0.4426

The information below is about J4_5WWT_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_65285.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9OWO|1|C|G|7
9OWO|1|C|U|8
9OWO|1|C|A|9
9OWO|1|C|G|10
*
9OWO|1|C|C|24
9OWO|1|C|A|25
9OWO|1|C|C|26
9OWO|1|C|C|27
*
9OWO|1|C|G|41
9OWO|1|C|G|42
9OWO|1|C|G|43
9OWO|1|C|G|44
9OWO|1|C|G|45
9OWO|1|C|U|46
9OWO|1|C|C|47
9OWO|1|C|G|48
*
9OWO|1|C|U|64
9OWO|1|C|C|65

Current chains

Chain C

precursor tRNA (81-MER)

Nearby chains

Chain A

Ribonuclease P class B; RNase P class B