J4_9P6Z_016

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

9P6Z|1|Zt|U|8, 9P6Z|1|Zt|U|47, 9P6Z|1|Zt|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9P6Z_016 not in the Motif Atlas

Homologous match to J4_1GAX_004

Geometric discrepancy: 0.3392

The information below is about J4_1GAX_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

9P6Z|1|Zt|A|7
9P6Z|1|Zt|U|8
9P6Z|1|Zt|A|9
9P6Z|1|Zt|G|10
*
9P6Z|1|Zt|C|25
9P6Z|1|Zt|A|26
9P6Z|1|Zt|U|27
*
9P6Z|1|Zt|A|43
9P6Z|1|Zt|G|44
9P6Z|1|Zt|G|45
9P6Z|1|Zt|G|46
9P6Z|1|Zt|U|47
9P6Z|1|Zt|C|48
9P6Z|1|Zt|C|49
*
9P6Z|1|Zt|G|65
9P6Z|1|Zt|U|66

Current chains

Chain Zt

Z site tRNA

Nearby chains

Chain Lo

60S ribosomal protein L36a