J4_9P79_001

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9P79|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|C|111
9P79|1|L5|C|112
*
9P79|1|L5|G|278
9P79|1|L5|A|279
9P79|1|L5|G|280
9P79|1|L5|U|281
9P79|1|L5|C|282
9P79|1|L5|G|283
*
9P79|1|L5|C|304
9P79|1|L5|A|305
9P79|1|L5|A|306
9P79|1|L5|A|307
9P79|1|L5|G|308
9P79|1|L5|C|309
9P79|1|L5|G|310
*
9P79|1|L5|U|327
9P79|1|L5|A|328
9P79|1|L5|A|329
9P79|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36