J4_9P79_002

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9P79|1|L5|A|218, 9P79|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|C|196
9P79|1|L5|A|197
9P79|1|L5|A|198
9P79|1|L5|G|199
*
9P79|1|L5|C|215
9P79|1|L5|C|216
9P79|1|L5|C|217
9P79|1|L5|A|218
9P79|1|L5|G|219
9P79|1|L5|C|220
9P79|1|L5|C|221
9P79|1|L5|C|222
*
9P79|1|L5|G|226
9P79|1|L5|A|227
9P79|1|L5|C|228
*
9P79|1|L5|G|240
9P79|1|L5|G|241
9P79|1|L5|U|242
9P79|1|L5|A|243
9P79|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26