J4_9P7D_011

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9P7D|1|L5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7D|1|L5|C|4231
9P7D|1|L5|U|4232
9P7D|1|L5|A|4233
9P7D|1|L5|A|4234
9P7D|1|L5|G|4235
*
9P7D|1|L5|U|4289
9P7D|1|L5|U|4290
9P7D|1|L5|G|4291
*
9P7D|1|L5|C|4318
9P7D|1|L5|C|4319
*
9P7D|1|L5|G|4328
9P7D|1|L5|G|4329
9P7D|1|L5|G|4330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a