J4_9P7F_003

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9P7F|1|L5|A|218, 9P7F|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7F|1|L5|C|196
9P7F|1|L5|A|197
9P7F|1|L5|A|198
9P7F|1|L5|G|199
*
9P7F|1|L5|C|215
9P7F|1|L5|C|216
9P7F|1|L5|C|217
9P7F|1|L5|A|218
9P7F|1|L5|G|219
9P7F|1|L5|C|220
9P7F|1|L5|C|221
9P7F|1|L5|C|222
*
9P7F|1|L5|G|226
9P7F|1|L5|A|227
9P7F|1|L5|C|228
*
9P7F|1|L5|G|240
9P7F|1|L5|G|241
9P7F|1|L5|U|242
9P7F|1|L5|A|243
9P7F|1|L5|G|244

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26