J4_9P7G_002

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9P7G|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7G|1|L5|C|111
9P7G|1|L5|C|112
*
9P7G|1|L5|G|278
9P7G|1|L5|A|279
9P7G|1|L5|G|280
9P7G|1|L5|U|281
9P7G|1|L5|C|282
9P7G|1|L5|G|283
*
9P7G|1|L5|C|304
9P7G|1|L5|A|305
9P7G|1|L5|A|306
9P7G|1|L5|A|307
9P7G|1|L5|G|308
9P7G|1|L5|C|309
9P7G|1|L5|G|310
*
9P7G|1|L5|U|327
9P7G|1|L5|A|328
9P7G|1|L5|A|329
9P7G|1|L5|G|330

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36