J4_9P7G_005

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9P7G|1|L5|A|2366, 9P7G|1|L5|U|2369, 9P7G|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7G|1|L5|OMC|2365
9P7G|1|L5|A|2366
9P7G|1|L5|A|2367
9P7G|1|L5|A|2368
9P7G|1|L5|U|2369
9P7G|1|L5|A|2370
9P7G|1|L5|U|2371
*
9P7G|1|L5|A|2389
9P7G|1|L5|G|2390
9P7G|1|L5|G|2391
*
9P7G|1|L5|OMC|2824
9P7G|1|L5|A|2825
9P7G|1|L5|U|2826
9P7G|1|L5|G|2827
9P7G|1|L5|U|2828
9P7G|1|L5|U|2829
*
9P7G|1|L5|A|3856
9P7G|1|L5|G|3857

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain CI

Transcription factor BTF3

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31