J4_9P8C_007

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9P8C|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8C|1|L5|G|2618
9P8C|1|L5|G|2619
*
9P8C|1|L5|U|2637
9P8C|1|L5|G|2638
9P8C|1|L5|U|2639
9P8C|1|L5|G|2640
9P8C|1|L5|A|2641
9P8C|1|L5|A|2642
*
9P8C|1|L5|U|2692
9P8C|1|L5|G|2693
9P8C|1|L5|G|2694
9P8C|1|L5|A|2695
9P8C|1|L5|A|2696
9P8C|1|L5|A|2697
9P8C|1|L5|G|2698
*
9P8C|1|L5|U|2718
9P8C|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38