J4_9P8H_001
3D structure
- PDB id
- 9P8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9P8H|1|AP|U|47, 9P8H|1|AP|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9P8H_001 not in the Motif Atlas
- Homologous match to J4_1GAX_004
- Geometric discrepancy: 0.2167
- The information below is about J4_1GAX_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9P8H|1|AP|G|7
9P8H|1|AP|U|8
9P8H|1|AP|A|9
9P8H|1|AP|G|10
*
9P8H|1|AP|C|25
9P8H|1|AP|G|26
9P8H|1|AP|U|27
*
9P8H|1|AP|A|43
9P8H|1|AP|A|44
9P8H|1|AP|G|45
9P8H|1|AP|G|46
9P8H|1|AP|U|47
9P8H|1|AP|C|48
9P8H|1|AP|C|49
*
9P8H|1|AP|G|65
9P8H|1|AP|C|66
Current chains
- Chain AP
- A/P site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Ribosomal protein uL16-like
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: