J4_9PA7_002

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9PA7|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|111
9PA7|1|L5|C|112
*
9PA7|1|L5|G|278
9PA7|1|L5|A|279
9PA7|1|L5|G|280
9PA7|1|L5|U|281
9PA7|1|L5|C|282
9PA7|1|L5|G|283
*
9PA7|1|L5|C|304
9PA7|1|L5|A|305
9PA7|1|L5|A|306
9PA7|1|L5|A|307
9PA7|1|L5|G|308
9PA7|1|L5|C|309
9PA7|1|L5|G|310
*
9PA7|1|L5|U|327
9PA7|1|L5|A|328
9PA7|1|L5|A|329
9PA7|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36