J4_9PA7_003

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9PA7|1|L5|C|216, 9PA7|1|L5|C|217, 9PA7|1|L5|A|218, 9PA7|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|196
9PA7|1|L5|A|197
9PA7|1|L5|A|198
9PA7|1|L5|G|199
*
9PA7|1|L5|C|215
9PA7|1|L5|C|216
9PA7|1|L5|C|217
9PA7|1|L5|A|218
9PA7|1|L5|G|219
9PA7|1|L5|C|220
9PA7|1|L5|C|221
9PA7|1|L5|C|222
*
9PA7|1|L5|G|226
9PA7|1|L5|A|227
9PA7|1|L5|C|228
*
9PA7|1|L5|G|240
9PA7|1|L5|G|241
9PA7|1|L5|U|242
9PA7|1|L5|A|243
9PA7|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26