J4_9PA7_014

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUAG*CGU*AAGGUCC*GC

Length

16 nucleotides

Bulged bases

9PA7|1|Pt|U|8, 9PA7|1|Pt|U|47, 9PA7|1|Pt|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PA7_014 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2033

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9PA7|1|Pt|G|7
9PA7|1|Pt|U|8
9PA7|1|Pt|A|9
9PA7|1|Pt|G|10
*
9PA7|1|Pt|C|25
9PA7|1|Pt|G|26
9PA7|1|Pt|U|27
*
9PA7|1|Pt|A|43
9PA7|1|Pt|A|44
9PA7|1|Pt|G|45
9PA7|1|Pt|G|46
9PA7|1|Pt|U|47
9PA7|1|Pt|C|48
9PA7|1|Pt|C|49
*
9PA7|1|Pt|G|65
9PA7|1|Pt|C|66

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Ribosomal protein uL16-like

Chain S2

Small subunit ribosomal RNA; SSU rRNA