J4_9PBE_010

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9PBE|1|L5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|C|4231
9PBE|1|L5|U|4232
9PBE|1|L5|A|4233
9PBE|1|L5|A|4234
9PBE|1|L5|G|4235
*
9PBE|1|L5|U|4289
9PBE|1|L5|U|4290
9PBE|1|L5|G|4291
*
9PBE|1|L5|C|4318
9PBE|1|L5|C|4319
*
9PBE|1|L5|G|4328
9PBE|1|L5|G|4329
9PBE|1|L5|G|4330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a