J4_9PBE_016
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- A(PSU)CUUGGGAGCGGGCGUCCCCGCCC*GCG(OMU)U*A(PSU)(OMG)GAAUAGG*CAUGAU
- Length
- 46 nucleotides
- Bulged bases
- 9PBE|1|S2|C|687, 9PBE|1|S2|U|688, 9PBE|1|S2|G|696, 9PBE|1|S2|G|697, 9PBE|1|S2|G|698, 9PBE|1|S2|C|730, 9PBE|1|S2|G|731, 9PBE|1|S2|U|732, 9PBE|1|S2|C|733, 9PBE|1|S2|C|734, 9PBE|1|S2|C|735, 9PBE|1|S2|U|871, 9PBE|1|S2|G|873, 9PBE|1|S2|A|913
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PBE|1|S2|A|685
9PBE|1|S2|PSU|686
9PBE|1|S2|C|687
9PBE|1|S2|U|688
9PBE|1|S2|U|689
9PBE|1|S2|G|690
9PBE|1|S2|G|691
9PBE|1|S2|G|692
9PBE|1|S2|A|693
9PBE|1|S2|G|694
9PBE|1|S2|C|695
9PBE|1|S2|G|696
9PBE|1|S2|G|697
9PBE|1|S2|G|698
9PBE|1|S2|C|730
9PBE|1|S2|G|731
9PBE|1|S2|U|732
9PBE|1|S2|C|733
9PBE|1|S2|C|734
9PBE|1|S2|C|735
9PBE|1|S2|C|736
9PBE|1|S2|G|737
9PBE|1|S2|C|738
9PBE|1|S2|C|739
9PBE|1|S2|C|746
*
9PBE|1|S2|G|796
9PBE|1|S2|C|797
9PBE|1|S2|G|798
9PBE|1|S2|OMU|799
9PBE|1|S2|U|800
*
9PBE|1|S2|A|865
9PBE|1|S2|PSU|866
9PBE|1|S2|OMG|867
9PBE|1|S2|G|868
9PBE|1|S2|A|869
9PBE|1|S2|A|870
9PBE|1|S2|U|871
9PBE|1|S2|A|872
9PBE|1|S2|G|873
9PBE|1|S2|G|874
*
9PBE|1|S2|C|912
9PBE|1|S2|A|913
9PBE|1|S2|U|914
9PBE|1|S2|G|915
9PBE|1|S2|A|916
9PBE|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: