J4_9PG8_003

3D structure

PDB id

9PG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PG8|1|A|G|2492
9PG8|1|A|C|2493
9PG8|1|A|C|2494
9PG8|1|A|U|2495
9PG8|1|A|G|2496
*
9PG8|1|A|C|2508
9PG8|1|A|A|2509
9PG8|1|A|U|2510
9PG8|1|A|C|2511
9PG8|1|A|A|2512
9PG8|1|A|C|2513
*
9PG8|1|A|G|2537
9PG8|1|A|C|2538
9PG8|1|A|A|2539
9PG8|1|A|C|2540
9PG8|1|A|C|2541
9PG8|1|A|G|2542
*
9PG8|1|A|C|2637
9PG8|1|A|U|2638
9PG8|1|A|C|2639
9PG8|1|A|C|2640
9PG8|1|A|A|2641
9PG8|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial