J4_9PGF_004

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9PGF|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PGF_004 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.1582

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9PGF|1|A|C|2544
9PGF|1|A|U|2545
9PGF|1|A|G|2546
*
9PGF|1|A|C|2569
9PGF|1|A|C|2570
*
9PGF|1|A|G|2587
9PGF|1|A|C|2588
9PGF|1|A|A|2589
9PGF|1|A|A|2590
9PGF|1|A|A|2591
9PGF|1|A|G|2592
9PGF|1|A|G|2593
9PGF|1|A|U|2594
9PGF|1|A|A|2595
9PGF|1|A|G|2596
*
9PGF|1|A|U|2630
9PGF|1|A|G|2631
9PGF|1|A|A|2632
9PGF|1|A|A|2633
9PGF|1|A|U|2634
9PGF|1|A|G|2635

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Ax

P/P-tRNA

Chain D

39S ribosomal protein L2, mitochondrial