J4_9PGF_006

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAAG*CGUUCCAG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

9PGF|1|AA|A|700, 9PGF|1|AA|U|711, 9PGF|1|AA|C|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGF|1|AA|C|698
9PGF|1|AA|A|699
9PGF|1|AA|A|700
9PGF|1|AA|G|701
*
9PGF|1|AA|C|708
9PGF|1|AA|G|709
9PGF|1|AA|U|710
9PGF|1|AA|U|711
9PGF|1|AA|C|712
9PGF|1|AA|C|713
9PGF|1|AA|A|714
9PGF|1|AA|G|715
*
9PGF|1|AA|C|800
9PGF|1|AA|A|801
9PGF|1|AA|C|802
*
9PGF|1|AA|G|811
9PGF|1|AA|A|812
9PGF|1|AA|A|813
9PGF|1|AA|A|814
9PGF|1|AA|C|815
9PGF|1|AA|A|816
9PGF|1|AA|G|817

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial