J4_9PGF_007

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GAGUUCAC*GACA*UAG*CC

Length

17 nucleotides

Bulged bases

9PGF|1|AA|C|722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGF|1|AA|G|717
9PGF|1|AA|A|718
9PGF|1|AA|G|719
9PGF|1|AA|U|720
9PGF|1|AA|U|721
9PGF|1|AA|C|722
9PGF|1|AA|A|723
9PGF|1|AA|C|724
*
9PGF|1|AA|G|750
9PGF|1|AA|A|751
9PGF|1|AA|C|752
9PGF|1|AA|A|753
*
9PGF|1|AA|U|789
9PGF|1|AA|A|790
9PGF|1|AA|G|791
*
9PGF|1|AA|C|797
9PGF|1|AA|C|798

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial