J4_9PGI_006
3D structure
- PDB id
- 9PGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state with TACO1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CAAG*CGUUCCAG*CAC*GAAACAG
- Length
- 22 nucleotides
- Bulged bases
- 9PGI|1|AA|A|700, 9PGI|1|AA|U|711, 9PGI|1|AA|C|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PGI|1|AA|C|698
9PGI|1|AA|A|699
9PGI|1|AA|A|700
9PGI|1|AA|G|701
*
9PGI|1|AA|C|708
9PGI|1|AA|G|709
9PGI|1|AA|U|710
9PGI|1|AA|U|711
9PGI|1|AA|C|712
9PGI|1|AA|C|713
9PGI|1|AA|A|714
9PGI|1|AA|G|715
*
9PGI|1|AA|C|800
9PGI|1|AA|A|801
9PGI|1|AA|C|802
*
9PGI|1|AA|G|811
9PGI|1|AA|A|812
9PGI|1|AA|A|813
9PGI|1|AA|A|814
9PGI|1|AA|C|815
9PGI|1|AA|A|816
9PGI|1|AA|G|817
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A0
- Small ribosomal subunit protein mS34
- Chain AM
- 28S ribosomal protein S16, mitochondrial
- Chain AU
- 28S ribosomal protein S26, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain Q
- 39S ribosomal protein L19, mitochondrial
Coloring options: