J4_9PGI_007

3D structure

PDB id

9PGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAGUUCAC*GACA*UAG*CC

Length

17 nucleotides

Bulged bases

9PGI|1|AA|C|722, 9PGI|1|AA|A|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGI|1|AA|G|717
9PGI|1|AA|A|718
9PGI|1|AA|G|719
9PGI|1|AA|U|720
9PGI|1|AA|U|721
9PGI|1|AA|C|722
9PGI|1|AA|A|723
9PGI|1|AA|C|724
*
9PGI|1|AA|G|750
9PGI|1|AA|A|751
9PGI|1|AA|C|752
9PGI|1|AA|A|753
*
9PGI|1|AA|U|789
9PGI|1|AA|A|790
9PGI|1|AA|G|791
*
9PGI|1|AA|C|797
9PGI|1|AA|C|798

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial