J4_9PGL_003

3D structure

PDB id

9PGL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGL|1|A|G|2492
9PGL|1|A|C|2493
9PGL|1|A|C|2494
9PGL|1|A|U|2495
9PGL|1|A|G|2496
*
9PGL|1|A|C|2508
9PGL|1|A|A|2509
9PGL|1|A|U|2510
9PGL|1|A|C|2511
9PGL|1|A|A|2512
9PGL|1|A|C|2513
*
9PGL|1|A|G|2537
9PGL|1|A|C|2538
9PGL|1|A|A|2539
9PGL|1|A|C|2540
9PGL|1|A|C|2541
9PGL|1|A|G|2542
*
9PGL|1|A|C|2637
9PGL|1|A|U|2638
9PGL|1|A|C|2639
9PGL|1|A|C|2640
9PGL|1|A|A|2641
9PGL|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial