J4_9PGM_003

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|A|G|2492
9PGM|1|A|C|2493
9PGM|1|A|C|2494
9PGM|1|A|U|2495
9PGM|1|A|G|2496
*
9PGM|1|A|C|2508
9PGM|1|A|A|2509
9PGM|1|A|U|2510
9PGM|1|A|C|2511
9PGM|1|A|A|2512
9PGM|1|A|C|2513
*
9PGM|1|A|G|2537
9PGM|1|A|C|2538
9PGM|1|A|A|2539
9PGM|1|A|C|2540
9PGM|1|A|C|2541
9PGM|1|A|G|2542
*
9PGM|1|A|C|2637
9PGM|1|A|U|2638
9PGM|1|A|C|2639
9PGM|1|A|C|2640
9PGM|1|A|A|2641
9PGM|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial