J4_9PGM_005

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAAG*CGUUCCAG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

9PGM|1|AA|A|700, 9PGM|1|AA|U|711, 9PGM|1|AA|C|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|AA|C|698
9PGM|1|AA|A|699
9PGM|1|AA|A|700
9PGM|1|AA|G|701
*
9PGM|1|AA|C|708
9PGM|1|AA|G|709
9PGM|1|AA|U|710
9PGM|1|AA|U|711
9PGM|1|AA|C|712
9PGM|1|AA|C|713
9PGM|1|AA|A|714
9PGM|1|AA|G|715
*
9PGM|1|AA|C|800
9PGM|1|AA|A|801
9PGM|1|AA|C|802
*
9PGM|1|AA|G|811
9PGM|1|AA|A|812
9PGM|1|AA|A|813
9PGM|1|AA|A|814
9PGM|1|AA|C|815
9PGM|1|AA|A|816
9PGM|1|AA|G|817

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial