J4_9PGM_006

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAGUUCAC*GACA*UAG*CC

Length

17 nucleotides

Bulged bases

9PGM|1|AA|U|721, 9PGM|1|AA|C|722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|AA|G|717
9PGM|1|AA|A|718
9PGM|1|AA|G|719
9PGM|1|AA|U|720
9PGM|1|AA|U|721
9PGM|1|AA|C|722
9PGM|1|AA|A|723
9PGM|1|AA|C|724
*
9PGM|1|AA|G|750
9PGM|1|AA|A|751
9PGM|1|AA|C|752
9PGM|1|AA|A|753
*
9PGM|1|AA|U|789
9PGM|1|AA|A|790
9PGM|1|AA|G|791
*
9PGM|1|AA|C|797
9PGM|1|AA|C|798

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial