J4_9PGM_009
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GU(1MA)(2MG)*CAC*GAGAUUU*ACC
- Length
- 17 nucleotides
- Bulged bases
- 9PGM|1|B|U|8, 9PGM|1|B|U|48
- QA status
- Modified nucleotides: 1MA, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PGM|1|B|G|7
9PGM|1|B|U|8
9PGM|1|B|1MA|9
9PGM|1|B|2MG|10
*
9PGM|1|B|C|25
9PGM|1|B|A|26
9PGM|1|B|C|27
*
9PGM|1|B|G|43
9PGM|1|B|A|44
9PGM|1|B|G|45
9PGM|1|B|A|46
9PGM|1|B|U|48
9PGM|1|B|U|49
9PGM|1|B|U|50
*
9PGM|1|B|A|64
9PGM|1|B|C|65
9PGM|1|B|C|66
Current chains
- Chain B
- mitochondrial tRNAVal
Nearby chains
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain P
- 39S ribosomal protein L18, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
Coloring options: