J4_9PII_013

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9PII|1|a|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PII|1|a|C|1833
9PII|1|a|U|1834
9PII|1|a|2MG|1835
*
9PII|1|a|C|1905
9PII|1|a|G|1906
*
9PII|1|a|C|1924
9PII|1|a|C|1925
9PII|1|a|U|1926
9PII|1|a|A|1927
9PII|1|a|A|1928
9PII|1|a|G|1929
9PII|1|a|G|1930
9PII|1|a|U|1931
9PII|1|a|A|1932
9PII|1|a|G|1933
*
9PII|1|a|C|1967
9PII|1|a|G|1968
9PII|1|a|A|1969
9PII|1|a|A|1970
9PII|1|a|U|1971
9PII|1|a|G|1972

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2