J4_9PIJ_002

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9PIJ|1|A|C|183, 9PIJ|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PIJ|1|A|G|142
9PIJ|1|A|A|143
9PIJ|1|A|G|144
*
9PIJ|1|A|C|178
9PIJ|1|A|A|179
9PIJ|1|A|U|180
9PIJ|1|A|A|181
9PIJ|1|A|A|182
9PIJ|1|A|C|183
9PIJ|1|A|G|184
*
9PIJ|1|A|C|193
9PIJ|1|A|C|194
9PIJ|1|A|A|195
9PIJ|1|A|A|196
9PIJ|1|A|A|197
9PIJ|1|A|G|198
*
9PIJ|1|A|U|219
9PIJ|1|A|G|220
9PIJ|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20